PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 328182
Common NameARALYDRAFT_328182
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 278aa    MW: 28677.8 Da    PI: 4.6058
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
328182genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00023145165323
              ETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
              C+ Cgk F ++     H+r H
   328182 145 CNVCGKGFASWKAVFGHLRQH 165
              *******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.84E-5130166No hitNo description
PROSITE patternPS000280145165IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MSNPEKSKIN EEDIIENSDE SDYLWSDEEG EIREIVLALP ALRLSESLHV DETIRNEAAA  60
AANLIVAAVE EAAGKTDQIA SGIGNASGTP NSKKIGRPRV LLEAEAAASG STAIGTTSTE  120
REVVKKPRRK GSTQLTHLPQ GPPMCNVCGK GFASWKAVFG HLRQHKDRGY LGFLPPPTFN  180
AAEEGFGGVA TVSSAVGVAT ASSAVGVAIA SSGGGVATAC AAGGVATSSS AGTGAVGIDL  240
NKDPIEEEDK APGPKRKFDL NRSPPQDDEE EKDEKAE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002869068.10.0hypothetical protein ARALYDRAFT_328182
TrEMBLD7MC520.0D7MC52_ARALL; Putative uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_70004090.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58752241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35700.11e-84C2H2 family protein